bidsapp

Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.

Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software package.

BIDS app wrapping recon-all from FreeSurfer

Resting state HRF estimation from BOLD-fMRI signal

A BIDS App for minimal preprocessing using the HCP Pipelines

Reconstruction of preprocessed q-space images (dMRI)

Hyperalignment is a functional alignment method that aligns subjects' brain data in a high-dimensional space of voxels/features.

A Django(backend) & React(frontend) based full-stack real time auction application

BrainSuite's structural, diffusion, and functional MRI processing pipelines with QC functionalities.

BIDS App containing an instance of the SPM software.

BIDS Application for the Configurable Pipeline for the Analysis of Connectomes (C-PAC)

an SPM centric BIDS app

runs MVPA and RSA analysis BIDS bold derivative data

Predicts brain age, based on data from Freesurfer 5.3

Human infant pipeline, based on abcd-hcp-pipeline, to process fMRI data.

BIDS app using deepMReye to decode eye motion for fMRI time series data.

BIDS App for BROCCOLI

PCP Quality Assessment Protocol

runs fast optimization of preprocessing pipelines for BOLD fMRI

BIDS App for resting state signal extraction using nilearn.