neuroimaging-analysis

This is the repository for the BioImage Suite Web Project

Exploring, organizing, and analysing neuroimages (MR focus)

FSL-R Interface package

MATLAB toolbox to automatically detect, analyze and visualize spatiotemporal patterns in neural population activity, developed by Dr. Pulin Gong's group at University of Sydney

Open Source EEG

Legacy PSMD tool, superseded by DELTA-SVD

Neuroimaging analysis in Python

Threshold-free cluster enhancement toolbox for Matlab and Python

Perform automatic skull-stripping for neuroimage analysis

Preprocessing toolbox for rat rs-fMRI data

The QDECR package for vertex-wise analyses in R

Matlab toolbox to deconvolve BOLD-fMRI data. It produces the underlying spatiotemporal neural and hemodynamic activity

Implementation of algorithm in 'Yikang Liu et al. (2020) Automatic Brain Extraction for Rodent MRI Images. Neuroinformatics. doi: 10.1007/s12021-020-09453-z''

Software for simulating MEG and EEG event-related responses. functional connectivity, and phase-amplitude coupling

3D motion correction and motion analysis for microscopy videos

A modern web interface for VoxLogicA, the Voxel-based Logical Analyser.

Scripts for the Cho et al. (2024) manuscript

Scripts, atlases etc. used for MRI & PET research in the AMYPAD consortium

Analysis code for connecting time-series properties of BOLD dynamics to connectivity properties using human fMRI and DWI data from HCP

Python implementation of various Brainstorm functions, often written for GPU or jit speed-up.