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@barricklab

Barrick Lab

Barrick Lab at the University of Texas at Austin

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  1. breseq breseq Public

    breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq …

    GDScript 214 24

  2. LTEE-Ecoli LTEE-Ecoli Public

    Genomics resources for the Long-Term Evolution Experiment with E. coli

    GAP 20 5

  3. ostir ostir Public

    Software for predicting translation initiation rates in bacteria

    Python 34 10

  4. pLannotate pLannotate Public

    Forked from mmcguffi/pLannotate

    Webserver and command line tool for annotating engineered plasmids

    Python 17 4

  5. brefito brefito Public

    Snakemake pipelines for analyzing resequenced bacterial genomes

    Python 4 1

  6. seabreeze seabreeze Public

    seabreeze: A Pipeline for Analyzing Structural Variation Between Bacterial Genome Assemblies

    Python 7 2

Repositories

Showing 10 of 56 repositories
  • conda Public

    Pre-release conda channel for breseq, auto-built from barricklab/breseq master

    barricklab/conda's past year of commit activity
    Shell 1 0 0 0 Updated Sep 30, 2026
  • breseq-ext-specificity Public

    breseq extension for analyzing the specificity of genome evolution in samples from different treatments

    barricklab/breseq-ext-specificity's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 30, 2026
  • evospec Public

    Tests of whether genome evolution was specific to the treatment it happened under

    barricklab/evospec's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 30, 2026
  • breseq Public

    breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a command line tool implemented in C++.

    barricklab/breseq's past year of commit activity
    GDScript 214 GPL-2.0 24 21 0 Updated Sep 29, 2026
  • ostir Public

    Software for predicting translation initiation rates in bacteria

    barricklab/ostir's past year of commit activity
    Python 34 GPL-3.0 10 3 (1 issue needs help) 0 Updated Sep 21, 2026
  • CNery Public

    breseq copy number variation extension

    barricklab/CNery's past year of commit activity
    Python 2 GPL-2.0 0 1 0 Updated Sep 17, 2026
  • brefito Public

    Snakemake pipelines for analyzing resequenced bacterial genomes

    barricklab/brefito's past year of commit activity
    Python 4 MIT 1 0 0 Updated Sep 16, 2026
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    barricklab/bioconda-recipes's past year of commit activity
    Shell 0 MIT 4,151 0 0 Updated Sep 12, 2026
  • genomediff-python Public Forked from rohanmaddamsetti/genomediff-python

    GenomeDiff (*.gd) file parser for Python

    barricklab/genomediff-python's past year of commit activity
    Python 0 MIT 5 0 1 Updated Sep 11, 2026
  • ltee-sv-seabreeze Public Forked from barricklab/seabreeze

    Modified version of seabreeze for analysis of LTEE data

    barricklab/ltee-sv-seabreeze's past year of commit activity
    GAP 0 2 0 0 Updated Aug 10, 2026
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