Skip to content
@OpenMS

OpenMS

OpenMS is an open-source software library for LC-MS data management and analysis
README.md

Welcome to @OpenMS!

@OpenMS is an open-source C++ software library for LC-MS data management and analysis with python wrappers (pyOpenMS), a large modular toolset and workflows for e.g., Galaxy, KNIME and nextflow.

Here's how to get started:

All Jobs Status

Repository Status
OpenMS Nightly
workflow
pyOpenMS pyOpenMS Wheels
Documentation Documentation Validation
openms.de Netlify Status
CDash (external server) build status

Pinned Loading

  1. OpenMS OpenMS Public

    The codebase of the OpenMS project

    C++ 621 440

  2. OpenMS-docs OpenMS-docs Public archive

    OpenMS Documentation.

    CSS 2 26

  3. contrib contrib Public

    Automated CMake build scripts for the OpenMS contrib libraries

    CMake 22

  4. THIRDPARTY THIRDPARTY Public

    External binary dependencies (e.g. search engine binaries) packaged in installers

    2 13

  5. dockerfiles dockerfiles Public archive

    This repository holds Dockerfiles for creating docker images for several OpenMS configurations based on different base images.

    Dockerfile 2 8

  6. pyopenms-docs pyopenms-docs Public archive

    pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.

    Python 52 78

Repositories

Showing 10 of 48 repositories
  • OpenMS Public

    The codebase of the OpenMS project

    OpenMS/OpenMS's past year of commit activity
    C++ 621 440 123 (2 issues need help) 70 Updated Sep 28, 2026
  • streamlit-template Public
    OpenMS/streamlit-template's past year of commit activity
    Python 18 39 36 29 Updated Sep 28, 2026
  • quantms-web Public
    OpenMS/quantms-web's past year of commit activity
    Python 0 2 1 14 Updated Sep 27, 2026
  • OpenMS-website Public

    Hugo sources for the OpenMS website

    OpenMS/OpenMS-website's past year of commit activity
    CSS 0 23 1 3 Updated Sep 27, 2026
  • OpenDIAKiosk Public Forked from OpenMS/streamlit-template

    Data-Independent Acquisition Information and Tools Hub

    OpenMS/OpenDIAKiosk's past year of commit activity
    Python 0 39 2 0 Updated Sep 26, 2026
  • THIRDPARTY Public

    External binary dependencies (e.g. search engine binaries) packaged in installers

    OpenMS/THIRDPARTY's past year of commit activity
    2 13 1 1 Updated Sep 24, 2026
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    OpenMS/bioconda-recipes's past year of commit activity
    Shell 0 MIT 4,145 0 0 Updated Sep 24, 2026
  • pyopenms_viz Public

    Streamlining Mass Spectrometry Data Visualization with Pandas

    OpenMS/pyopenms_viz's past year of commit activity
    Jupyter Notebook 25 BSD-3-Clause 21 10 (1 issue needs help) 8 Updated Sep 16, 2026
  • mzpeak Public

    A C++ library that implements the mzPeak file format for efficiently storing data acquired by a mass spectrometer.

    OpenMS/mzpeak's past year of commit activity
    C++ 2 BSD-3-Clause 1 0 0 Updated Sep 14, 2026
  • Assets Public

    Additional files (logos, splash screen, icons)

    OpenMS/Assets's past year of commit activity
    Jupyter Notebook 0 3 3 0 Updated Sep 10, 2026
View all repositories