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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 398 164

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 27 16

Repositories

Showing 10 of 517 repositories
  • biodata-schema Public

    Complete and accurate metadata for bioscience

    AllenInstitute/biodata-schema's past year of commit activity
    Python 2 MIT 0 69 2 Updated Oct 2, 2026
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder's past year of commit activity
    TypeScript 22 BSD-3-Clause 10 56 13 Updated Oct 2, 2026
  • HMBA_WB_Atlas Public
    AllenInstitute/HMBA_WB_Atlas's past year of commit activity
    Python 0 0 29 1 Updated Oct 2, 2026
  • zarr-vectors-tools Public

    Tools and workflows based on the zarr-vectors-py API.

    AllenInstitute/zarr-vectors-tools's past year of commit activity
    Python 6 2 1 0 Updated Oct 2, 2026
  • zarr-vectors-py Public

    Utilties and tools for working with data in the Zarr-vectors data structure

    AllenInstitute/zarr-vectors-py's past year of commit activity
    Python 7 BSD-3-Clause 3 0 1 Updated Oct 2, 2026
  • neuroglancer Public Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    AllenInstitute/neuroglancer's past year of commit activity
    TypeScript 0 Apache-2.0 419 0 1 Updated Oct 2, 2026
  • npc_lims Public

    Tools to fetch and update paths, metadata and state for Mindscope Neuropixels sessions, in the cloud.

    AllenInstitute/npc_lims's past year of commit activity
    Python 0 MIT 1 4 0 Updated Oct 2, 2026
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES's past year of commit activity
    IGOR Pro 30 11 288 6 Updated Oct 2, 2026
  • CHARGE Public

    Cell HierARchy Gene Explorer (CHARGE) is an interactive tool for identifying genes of potential biological interest in a cell type taxonomy.

    AllenInstitute/CHARGE's past year of commit activity
    R 2 0 1 0 Updated Oct 1, 2026
  • ConnectsCommonConnectivity Public

    A repository to organize data models and code for creating a pilot common connectivity matrix for BRAIN CONNECTS

    AllenInstitute/ConnectsCommonConnectivity's past year of commit activity
    Jupyter Notebook 4 MIT 1 27 (1 issue needs help) 2 Updated Oct 1, 2026
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