Issues

• Outline color palette is ignored in render_shapes if no color is passed

  bug
  scverse/spatialdata-plot#777 · Filter by author MeyerBender opened on Sep 16, 2026

• render_labels raises IndexError when the table has rows for instances absent from the mask

  Bug

  scverse/spatialdata-plot#775 · Filter by author Zethson opened on Sep 4, 2026

• pl.show() leading to ValueError due to mismatch between number of axes and number of panels

  Bug

  scverse/spatialdata-plot#749 · Filter by author LucaMarconato opened on Jul 2, 2026
  1

• Make annotator widget available in marimo by using anywidget

  Enhancement

  scverse/spatialdata-plot#747 · Filter by author LucaMarconato opened on Jun 27, 2026

• Additive RGB color blending for render_shapes / render_labels (and render_points)

  scverse/spatialdata-plot#677 · Filter by author timtreis opened on May 20, 2026

• No support for .obsm keys as color source in render functions

  enhancementpriority: mediumutils 🔧
  scverse/spatialdata-plot#632 · Filter by author timtreis opened on Apr 24, 2026

• Failing to recreate Xenium Exlorer-style multi-stain segmentation panel plot

  scverse/spatialdata-plot#534 · Filter by author krademaker opened on Feb 3, 2026
  1

• Enable auto-completion

  scverse/spatialdata-plot#476 · Filter by author quentinblampey opened on Jul 18, 2025

• Adding plotting specific documentation

  documentationspatialproteomics
  scverse/spatialdata-plot#463 · Filter by author LucaMarconato opened on May 13, 2025
  1

• Feature: PCA aggregation for n >= 4 channels in render_images

  enhancementimages 🖼️
  scverse/spatialdata-plot#450 · Filter by author timtreis opened on Apr 22, 2025
  2

• Vega-like viewconfigurations

  scverse/spatialdata-plot#388 · Filter by author melonora opened on Nov 13, 2024
  1

• Feature request: visualizing individual z-planes (2.5D)

  scverse/spatialdata-plot#386 · Filter by author melonora opened on Nov 8, 2024

• Q: How to render xenium morphology image with original colors?

  images 🖼️needs infopriority: low
  scverse/spatialdata-plot#370 · Filter by author tsvvas opened on Oct 9, 2024
  15

• Interpolation problem for sparse image data?

  scverse/spatialdata-plot#351 · Filter by author LucaMarconato opened on Sep 8, 2024
  2

• Enhancement: Rasterization changes the value-range of the image.

  enhancementpriority: low
  scverse/spatialdata-plot#350 · Filter by author timtreis opened on Sep 4, 2024

• 3D visualize

  scverse/spatialdata-plot#385 · Filter by author Yifan-debug opened on Aug 18, 2024
  3

• Custom title when multiple coordinate system present and no coordinate system specified

  enhancementpriority: medium🗣️ discussion
  scverse/spatialdata-plot#269 · Filter by author LucaMarconato opened on May 30, 2024
  1

• Reproduce Napari visualizations

  enhancement
  scverse/spatialdata-plot#189 · Filter by author aeisenbarth opened on Nov 29, 2023
  3

• Feature request: remove need for intermediate pl calls when chaining renderers

  enhancementpriority: low
  scverse/spatialdata-plot#54 · Filter by author kevinyamauchi opened on Apr 14, 2023
  2

• consider removing _copy private method

  enhancementpriority: low
  scverse/spatialdata-plot#47 · Filter by author giovp opened on Apr 7, 2023