Issues

• simple_consensus_caller , how to automatically remove

  NVIDIA/VariantWorks#169 · Filter by author jelber2 opened on Jun 3, 2022

• [sample] filtering to consensus sample

  samples
  NVIDIA/VariantWorks#159 · Filter by author tijyojwad opened on Dec 14, 2020
  

• [loss] focal loss throwing an error when used in place of ce loss

  bug
  NVIDIA/VariantWorks#158 · Filter by author tijyojwad opened on Dec 11, 2020
  

• [Encoders] Handle exception samtools mpileup output when searching for insertions in SummaryEncoder

  bug
  NVIDIA/VariantWorks#156 · Filter by author ohadmo opened on Dec 8, 2020
  

• [I/O] KeyErrors are thrown for info columns not present in a region

  NVIDIA/VariantWorks#150 · Filter by author edawson opened on Nov 17, 2020
  1

• [I/O] Update VCF -> cuDF parser with more optimized version

  I/O
  NVIDIA/VariantWorks#135 · Filter by author tijyojwad opened on Oct 19, 2020
  

• [encoder] support latest samtools mpileup for summary encoder

  encodings
  NVIDIA/VariantWorks#132 · Filter by author tijyojwad opened on Oct 5, 2020
  

• [I/O] VCFReader crashes when reading from regions that are empty

  bugI/O
  NVIDIA/VariantWorks#129 · Filter by author edawson opened on Sep 29, 2020
  

• [visualization] ReadPileup visualizer to take encoding as input

  encodings
  NVIDIA/VariantWorks#124 · Filter by author tijyojwad opened on Sep 21, 2020
  

• [I/O] HDF Data Loader not showing speedup for multi threaded

  I/O
  NVIDIA/VariantWorks#123 · Filter by author tijyojwad opened on Sep 21, 2020 · v0.1.0-rc2
  1

  

• [samples] reduce memory consumption of consensus aummRY encoder hdf generator

  I/O
  NVIDIA/VariantWorks#117 · Filter by author tijyojwad opened on Sep 8, 2020

• [sdk] update VariantWorks installation to be based on conda

  sdk
  NVIDIA/VariantWorks#112 · Filter by author tijyojwad opened on Aug 24, 2020
  

• [samples] add test data for snp trainer

  samples
  NVIDIA/VariantWorks#110 · Filter by author tijyojwad opened on Aug 24, 2020
  

• [samples] add multi GPU support to snp caller sample

  samples
  NVIDIA/VariantWorks#108 · Filter by author tijyojwad opened on Aug 24, 2020
  

• [samples] add inference sample to variant caller trainer

  samples
  NVIDIA/VariantWorks#107 · Filter by author tijyojwad opened on Aug 24, 2020
  

• [summary_encoder] insertions next to deletes

  encodings
  NVIDIA/VariantWorks#104 · Filter by author tijyojwad opened on Aug 11, 2020

• [encoders] add ability to expose scalar features

  encodings
  NVIDIA/VariantWorks#101 · Filter by author tijyojwad opened on Aug 10, 2020
  

• [pileup_encoder] encoder layer configurability

  encodingsenhancement
  NVIDIA/VariantWorks#85 · Filter by author tijyojwad opened on Jul 1, 2020

• [sample_encoding] add multi sample support

  encodingsenhancement
  NVIDIA/VariantWorks#83 · Filter by author tijyojwad opened on Jun 22, 2020

• [data loader] add tests for data loader implementations

  I/O
  NVIDIA/VariantWorks#73 · Filter by author tijyojwad opened on Jun 8, 2020 · v0.1.0-rc2

• [logging] add logger to VariantWorks

  documentation
  NVIDIA/VariantWorks#55 · Filter by author tijyojwad opened on May 29, 2020 · v0.1.0-rc2

• [docs] add type info to APIs

  documentation
  NVIDIA/VariantWorks#53 · Filter by author tijyojwad opened on May 28, 2020 · v0.1.0-rc2

• [vcf_writer] add zygosity probability to INFO column

  enhancementI/O
  NVIDIA/VariantWorks#52 · Filter by author tijyojwad opened on May 28, 2020 · v0.1.0-rc2
  

• [confing] add configuration management for training/inference

  enhancement
  NVIDIA/VariantWorks#33 · Filter by author tijyojwad opened on May 11, 2020

• [visualization] dump visualizations for least confident samples

  NVIDIA/VariantWorks#26 · Filter by author tijyojwad opened on May 11, 2020